During the Earth Alliance Civil War, Captain Anderson and the crew of the Charon passed up an opportunity to join Captain Sheridan's Earth Alliance Resistance renegade fleet and oppose EA President Morgan Clark.
In 2266, the Charon was sent to the Vega Colony on a routine security patrol, when Captain Anderson diverted course to Babylon 5. The Charon took President Sheridan and Dureena Nafeel to the building site of the Victory class destroyer where the Charon's crew transferred over to the Excalibur and the Victory. Pierre Bouet was among those to board the Victory.
- The ultimate fate of the Charon is unknown since the Drakh fleet destroyed the shipyard where it was presumably left unmanned.
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